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SRX044575: Loligo vulgaris transcriptome data
1 LS454 (454 GS FLX) run: 69 spots, 16,438 bases, 74,060b downloads

Design: Library construction starts with total RNA reverse transcribed to cDNA with an oligo dT primer, with second strand then generated. The cDNA is digested with a restriction enzyme then adaptors ligated onto the double-stranded (ds) DNA. The adaptor ligated cDNA fragments are the amplified by PCR. This product is purified and processed for emPCR and 454 sequencing according to manufactures procedures.
Submitted by: University of Florida - Leonid Moroz (UF-LM)
Study: Phylogenomics reveals deep molluscan relationships
show Abstracthide Abstract
The evolutionary relationships among the eight major lineages of Mollusca remain unresolved despite their diversity and importance. Previous investigations of molluscan phylogeny, based primarily on nuclear ribosomal gene sequences or morphological data have been unsuccessful at elucidating these relationships. Limited genomic resources spanning the diversity of molluscs have prevented the use of a phylogenomic approach in resolving molluscan relationships. Here we use analyzed sequencing data from the tradiational expressed sequence tag (EST) and to the high throughput expression reads as well as genomic data, from all major lineages except Monoplacophora, in phylogenomic analyses and recover a well-supported topology. Our results strongly support the Aculifera hypothesis placing Polyplacophora (chitons) as the sister taxon of a monophyletic Aplacophora (worm-like molluscs). Additionally, within Conchifera, a sister-taxon relationship between Gastropoda and Bivalvia is supported. This grouping has received little consideration and thus we propose the node-based name Pleistomollusca. Our results also suggest advanced cephalization may have arisen more than once in Mollusca.
Sample: Loligo vulgaris
SAMN00216513 • SRS173304 • All experiments • All runs
Organism: Loligo vulgaris
Library:
Name: Lv
Instrument: 454 GS FLX
Strategy: AMPLICON
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 69 spots, 16,438 bases, 74,060b
Run# of Spots# of BasesSizePublished
SRR1089816916,43874,060b2013-04-12

ID:
52898

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